reduce.h File Reference

#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvBowtie/bowtie2/cuda/scoring.h>
#include <nvBowtie/bowtie2/cuda/params.h>
#include <nvBowtie/bowtie2/cuda/reduce_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::bowtie2::cuda::BaseScoringPipelineState< ScoringScheme >
struct	nvbio::bowtie2::cuda::BestApproxScoringPipelineState< ScoringScheme >
struct	nvbio::bowtie2::cuda::ReduceBestApproxContext
struct	nvbio::bowtie2::cuda::ReduceBestExactContext

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda

Functions
void	nvbio::bowtie2::cuda::score_reduce (const ReduceBestApproxContext context, const BestApproxScoringPipelineState< EditDistanceScoringScheme > &pipeline, const ParamsPOD &params)
void	nvbio::bowtie2::cuda::score_reduce (const ReduceBestApproxContext context, const BestApproxScoringPipelineState< SmithWatermanScoringScheme<> > &pipeline, const ParamsPOD &params)
void	nvbio::bowtie2::cuda::score_reduce_paired (const ReduceBestApproxContext context, const BestApproxScoringPipelineState< EditDistanceScoringScheme > &pipeline, const ParamsPOD &params)
void	nvbio::bowtie2::cuda::score_reduce_paired (const ReduceBestApproxContext context, const BestApproxScoringPipelineState< SmithWatermanScoringScheme<> > &pipeline, const ParamsPOD &params)