Detailed description

A context class for the score_reduce_kernel to be used in best-exact pipeline.

A trivial implementation, that never bails out.

Definition at line 113 of file reduce.h.

#include <reduce.h>

Public Methods
	ReduceBestExactContext ()

NVBIO_FORCEINLINE NVBIO_DEVICE void	best_score (const uint32 read_id, const ParamsPOD &params) const

NVBIO_FORCEINLINE NVBIO_DEVICE void	second_score (const uint32 read_id, const ParamsPOD &params) const

NVBIO_FORCEINLINE NVBIO_DEVICE bool	failure (const uint32 idx, const uint32 read_id, const uint32 top_flag, const ParamsPOD &params) const

Constructor & Destructor Documentation

nvbio::bowtie2::cuda::ReduceBestExactContext::ReduceBestExactContext ( )

inline

Definition at line 115 of file reduce.h.

NVBIO_FORCEINLINE NVBIO_DEVICE void nvbio::bowtie2::cuda::ReduceBestExactContext::best_score	(	const uint32	read_id,
		const ParamsPOD &	params
	)		const

inline

this method is called from score_reduce_kernel to report updates to the best score.

Definition at line 120 of file reduce.h.

NVBIO_FORCEINLINE NVBIO_DEVICE bool nvbio::bowtie2::cuda::ReduceBestExactContext::failure	(	const uint32	idx,
		const uint32	read_id,
		const uint32	top_flag,
		const ParamsPOD &	params
	)		const

inline

this method is called from score_reduce_kernel to report extension failures.

Definition at line 130 of file reduce.h.

NVBIO_FORCEINLINE NVBIO_DEVICE void nvbio::bowtie2::cuda::ReduceBestExactContext::second_score	(	const uint32	read_id,
		const ParamsPOD &	params
	)		const

inline

this method is called from score_reduce_kernel to report updates to the second best score.

Definition at line 125 of file reduce.h.

The documentation for this struct was generated from the following file: