sam.cpp File Reference

#include <stdlib.h>
#include <string.h>
#include <zlib/zlib.h>
#include <nvbio/basic/console.h>
#include <nvbio/io/reads/sam.h>

Go to the source code of this file.

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Macros
#define	NEXT(prev, next)

Macro Definition Documentation

#define NEXT	(		prev,
			next
	)

Value:

{                                           \
        next = strchr(prev, '\t');              \
        if (!next) {                                                    \
            log_error(stderr, "Error parsing SAM file (line %d): incomplete alignment section\n", numLines); \
            m_file_state = FILE_PARSE_ERROR;                            \
            return -1;                                                  \
        }                                                               \
        *next = '\0';                                                   \
        next++;                                                         \
    }