_bcf_sr_regions_t Struct Reference

Detailed description

Definition at line 43 of file synced_bcf_reader.h.

#include <synced_bcf_reader.h>

Public Members
tbx_t *	tbx
hts_itr_t *	itr
kstring_t	line
htsFile *	file
char *	fname
int	is_bin
char **	als
kstring_t	als_str
int	nals
int	mals
int	als_type
void(*	missed_reg_handler )(struct _bcf_sr_regions_t *, void *)
void *	missed_reg_data
struct _region_t *	regs
void *	seq_hash
char **	seq_names
int	nseqs
int	iseq
int	start
int	end
int	prev_seq
int	prev_start

Member Data Documentation

char** _bcf_sr_regions_t::als

Definition at line 52 of file synced_bcf_reader.h.

kstring_t _bcf_sr_regions_t::als_str

Definition at line 53 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::als_type

Definition at line 55 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::end

Definition at line 69 of file synced_bcf_reader.h.

htsFile* _bcf_sr_regions_t::file

Definition at line 49 of file synced_bcf_reader.h.

char* _bcf_sr_regions_t::fname

Definition at line 50 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::is_bin

Definition at line 51 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::iseq

Definition at line 68 of file synced_bcf_reader.h.

hts_itr_t* _bcf_sr_regions_t::itr

Definition at line 47 of file synced_bcf_reader.h.

kstring_t _bcf_sr_regions_t::line

Definition at line 48 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::mals

Definition at line 54 of file synced_bcf_reader.h.

void* _bcf_sr_regions_t::missed_reg_data

Definition at line 59 of file synced_bcf_reader.h.

void(* _bcf_sr_regions_t::missed_reg_handler)(struct _bcf_sr_regions_t *, void *)

Definition at line 58 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::nals

Definition at line 54 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::nseqs

Definition at line 67 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::prev_seq

Definition at line 70 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::prev_start

Definition at line 70 of file synced_bcf_reader.h.

struct _region_t* _bcf_sr_regions_t::regs

Definition at line 62 of file synced_bcf_reader.h.

void* _bcf_sr_regions_t::seq_hash

Definition at line 65 of file synced_bcf_reader.h.

char** _bcf_sr_regions_t::seq_names

Definition at line 66 of file synced_bcf_reader.h.

int _bcf_sr_regions_t::start

Definition at line 69 of file synced_bcf_reader.h.

tbx_t* _bcf_sr_regions_t::tbx

Definition at line 46 of file synced_bcf_reader.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/contrib/htslib/htslib/synced_bcf_reader.h