BAM_alignment_header Struct Reference

Detailed description

Definition at line 52 of file bam_io.h.

#include <bam_io.h>

Public Methods
uint32	bin (void) const
uint32	mapq (void) const
uint32	l_read_name (void) const
uint32	flags (void) const
uint32	num_cigar_ops (void) const

Public Members
int32	block_size
int32	refID
int32	pos
uint32	bin_mq_nl
uint32	flag_nc
int32	l_seq
int32	next_refID
int32	next_pos
int32	tlen

Member Function Documentation

uint32 BAM_alignment_header::bin ( void  ) const

inline

Definition at line 64 of file bam_io.h.

uint32 BAM_alignment_header::flags ( void  ) const

inline

Definition at line 67 of file bam_io.h.

uint32 BAM_alignment_header::l_read_name ( void  ) const

inline

Definition at line 66 of file bam_io.h.

uint32 BAM_alignment_header::mapq ( void  ) const

inline

Definition at line 65 of file bam_io.h.

uint32 BAM_alignment_header::num_cigar_ops ( void  ) const

inline

Definition at line 68 of file bam_io.h.

Member Data Documentation

uint32 BAM_alignment_header::bin_mq_nl

Definition at line 57 of file bam_io.h.

int32 BAM_alignment_header::block_size

Definition at line 54 of file bam_io.h.

uint32 BAM_alignment_header::flag_nc

Definition at line 58 of file bam_io.h.

int32 BAM_alignment_header::l_seq

Definition at line 59 of file bam_io.h.

int32 BAM_alignment_header::next_pos

Definition at line 61 of file bam_io.h.

int32 BAM_alignment_header::next_refID

Definition at line 60 of file bam_io.h.

int32 BAM_alignment_header::pos

Definition at line 56 of file bam_io.h.

int32 BAM_alignment_header::refID

Definition at line 55 of file bam_io.h.

int32 BAM_alignment_header::tlen

Definition at line 62 of file bam_io.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/bam_io.h