HTSBAMReader Struct Reference

Detailed description

----------------— BAM Reader ----------—

Definition at line 341 of file bam_io.h.

#include <bam_io.h>

Public Methods
	HTSBAMReader (const char *fname)
	~HTSBAMReader ()
bool	read_aln_batch (std::vector< bam1_t * > &batch, const uint64 batch_size=1000000)
bool	read_aln_batch (BAM_alignment_batch_SoA &batch, const uint64 batch_size=1000000)
bool	read_aln_batch_intv (BAM_alignment_batch_SoA &batch, const uint32 contig=1u, const uint64 start=0u, const uint64 end=1000000)

Public Members
bam_hdr_t *	header

Constructor & Destructor Documentation

HTSBAMReader::HTSBAMReader

(

const char *

fname)

HTSBAMReader::~HTSBAMReader

(

)

Member Function Documentation

bool HTSBAMReader::read_aln_batch	(	std::vector< bam1_t * > &	batch,
		const uint64	batch_size = 1000000
	)

bool HTSBAMReader::read_aln_batch	(	BAM_alignment_batch_SoA &	batch,
		const uint64	batch_size = 1000000
	)

bool HTSBAMReader::read_aln_batch_intv	(	BAM_alignment_batch_SoA &	batch,
		const uint32	contig = 1u,
		const uint64	start = 0u,
		const uint64	end = 1000000
	)

Member Data Documentation

bam_hdr_t* HTSBAMReader::header

Definition at line 344 of file bam_io.h.

---

The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/bam_io.h