HTSBAMWriter Struct Reference

Detailed description

----------------— BAM Writer ----------—

Definition at line 365 of file bam_io.h.

#include <bam_io.h>

Public Methods
	HTSBAMWriter (const char *fname)
	~HTSBAMWriter ()
void	write_hdr (bam_hdr_t *header)
void	write_aln_batch (std::vector< bam1_t * > &batch, H_VectorU64 shuffle_idx, bam_hdr_t *header)
void	write_aln_batch (BAM_alignment_batch_SoA &batch, H_VectorU64 shuffle_idx, bam_hdr_t *header)

Constructor & Destructor Documentation

HTSBAMWriter::HTSBAMWriter

(

const char *

fname)

HTSBAMWriter::~HTSBAMWriter

(

)

Member Function Documentation

void HTSBAMWriter::write_aln_batch	(	std::vector< bam1_t * > &	batch,
		H_VectorU64	shuffle_idx,
		bam_hdr_t *	header
	)

void HTSBAMWriter::write_aln_batch	(	BAM_alignment_batch_SoA &	batch,
		H_VectorU64	shuffle_idx,
		bam_hdr_t *	header
	)

void HTSBAMWriter::write_hdr

(

bam_hdr_t *

header)

---

The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/bam_io.h