OutputStageData Struct Reference

Detailed description

A small class encapsulating the core data needed by all output threads, i.e. the output file and its relevant statistics

Definition at line 46 of file output_thread.h.

#include <output_thread.h>

Inheritance diagram for OutputStageData:

Public Methods
	OutputStageData (io::SequenceDataOutputStream *file)
Public Methods inherited from SequenceStats
	SequenceStats ()

Public Members
io::SequenceDataOutputStream *	m_file
Public Members inherited from SequenceStats
Mutex	m_mutex
uint64	m_reads
uint64	m_bps
float	m_time

Constructor & Destructor Documentation

OutputStageData::OutputStageData ( io::SequenceDataOutputStream *  file)

inline

constructor

Parameters

file	input sequence file
max_strings	maximum number of strings per batch
max_bps	maximum number of base pairs per batch

Definition at line 54 of file output_thread.h.

Member Data Documentation

io::SequenceDataOutputStream* OutputStageData::m_file

Definition at line 56 of file output_thread.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvLighter/output_thread.h