bcf_sr_t Struct Reference

Detailed description

Definition at line 74 of file synced_bcf_reader.h.

#include <synced_bcf_reader.h>

Public Members
htsFile *	file
tbx_t *	tbx_idx
hts_idx_t *	bcf_idx
bcf_hdr_t *	header
hts_itr_t *	itr
const char *	fname
bcf1_t **	buffer
int	nbuffer
int	mbuffer
int	nfilter_ids
int *	filter_ids
int	type
int *	samples
int	n_smpl

Member Data Documentation

hts_idx_t* bcf_sr_t::bcf_idx

Definition at line 78 of file synced_bcf_reader.h.

bcf1_t** bcf_sr_t::buffer

Definition at line 82 of file synced_bcf_reader.h.

htsFile* bcf_sr_t::file

Definition at line 76 of file synced_bcf_reader.h.

int * bcf_sr_t::filter_ids

Definition at line 84 of file synced_bcf_reader.h.

const char* bcf_sr_t::fname

Definition at line 81 of file synced_bcf_reader.h.

bcf_hdr_t* bcf_sr_t::header

Definition at line 79 of file synced_bcf_reader.h.

hts_itr_t* bcf_sr_t::itr

Definition at line 80 of file synced_bcf_reader.h.

int bcf_sr_t::mbuffer

Definition at line 83 of file synced_bcf_reader.h.

int bcf_sr_t::n_smpl

Definition at line 86 of file synced_bcf_reader.h.

int bcf_sr_t::nbuffer

Definition at line 83 of file synced_bcf_reader.h.

int bcf_sr_t::nfilter_ids

Definition at line 84 of file synced_bcf_reader.h.

int* bcf_sr_t::samples

Definition at line 86 of file synced_bcf_reader.h.

tbx_t* bcf_sr_t::tbx_idx

Definition at line 77 of file synced_bcf_reader.h.

int bcf_sr_t::type

Definition at line 85 of file synced_bcf_reader.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/contrib/htslib/htslib/synced_bcf_reader.h