coord_to_seq< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct coord_to_seq< string_set_type >

Definition at line 209 of file assembly_graph_inl.h.

#include <assembly_graph_inl.h>

Public Types
typedef string_set_type::string_type	sequence

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	coord_to_seq (const uint32 _kmer_size, const string_set_type _string_set, const SequenceSetKmerCoord *_nodes, uint8 *_sequences)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	operator() (const uint64 node_idx) const

Public Members
const string_set_type	string_set
const uint32	kmer_size
const SequenceSetKmerCoord *	nodes
uint8 *	sequences

Member Typedef Documentation

template<typename string_set_type >

typedef string_set_type::string_type coord_to_seq< string_set_type >::sequence

Definition at line 211 of file assembly_graph_inl.h.

Constructor & Destructor Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_to_seq< string_set_type >::coord_to_seq ( const uint32  _kmer_size, const string_set_type  _string_set, const SequenceSetKmerCoord *  _nodes, uint8 *  _sequences  )

inline

Definition at line 218 of file assembly_graph_inl.h.

Member Function Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void coord_to_seq< string_set_type >::operator() ( const uint64  node_idx) const

inline

Definition at line 223 of file assembly_graph_inl.h.

Member Data Documentation

template<typename string_set_type >

const uint32 coord_to_seq< string_set_type >::kmer_size

Definition at line 213 of file assembly_graph_inl.h.

template<typename string_set_type >

const SequenceSetKmerCoord* coord_to_seq< string_set_type >::nodes

Definition at line 214 of file assembly_graph_inl.h.

template<typename string_set_type >

uint8* coord_to_seq< string_set_type >::sequences

Definition at line 215 of file assembly_graph_inl.h.

template<typename string_set_type >

const string_set_type coord_to_seq< string_set_type >::string_set

Definition at line 212 of file assembly_graph_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/assembly_graph_inl.h