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A view of the HitQueues class
Definition at line 163 of file proposal.h.
#include <proposal.h>
Public Types | |
| typedef device_view_subtype < ScoringQueues::parent_storage_type > ::type | parent_storage_type |
| typedef device_view_subtype < ScoringQueues::seed_storage_type > ::type | seed_storage_type |
| typedef device_view_subtype < ScoringQueues::ssa_storage_type > ::type | ssa_storage_type |
| typedef device_view_subtype < ScoringQueues::loc_storage_type > ::type | loc_storage_type |
| typedef device_view_subtype < ScoringQueues::score_storage_type > ::type | score_storage_type |
| typedef device_view_subtype < ScoringQueues::sink_storage_type > ::type | sink_storage_type |
| typedef HitQueuesDeviceView | device_view_type |
| view subtype More... | |
| typedef HitReference < HitQueuesView > | reference |
| reference subtype More... | |
Public Members | |
| parent_storage_type | parent |
| hit -> read mapping More... | |
| seed_storage_type | hit |
| hit info More... | |
| ssa_storage_type | ssa |
| hit ssa info More... | |
| loc_storage_type | loc |
| hit locations More... | |
| score_storage_type | score |
| hit scores More... | |
| sink_storage_type | sink |
| hit sinks More... | |
| loc_storage_type | opposite_loc |
| hit locations, opposite mate More... | |
| score_storage_type | opposite_score |
| hit scores, opposite mate More... | |
| sink_storage_type | opposite_sink |
| hit sinks, opposite mate More... | |
view subtype
Definition at line 172 of file proposal.h.
| typedef device_view_subtype<ScoringQueues::loc_storage_type>::type cufmi::bowtie2::cuda::HitQueuesDeviceView::loc_storage_type |
Definition at line 168 of file proposal.h.
| typedef device_view_subtype<ScoringQueues::parent_storage_type>::type cufmi::bowtie2::cuda::HitQueuesDeviceView::parent_storage_type |
Definition at line 165 of file proposal.h.
| typedef HitReference<HitQueuesView> cufmi::bowtie2::cuda::HitQueuesDeviceView::reference |
reference subtype
Definition at line 173 of file proposal.h.
| typedef device_view_subtype<ScoringQueues::score_storage_type>::type cufmi::bowtie2::cuda::HitQueuesDeviceView::score_storage_type |
Definition at line 169 of file proposal.h.
| typedef device_view_subtype<ScoringQueues::seed_storage_type>::type cufmi::bowtie2::cuda::HitQueuesDeviceView::seed_storage_type |
Definition at line 166 of file proposal.h.
| typedef device_view_subtype<ScoringQueues::sink_storage_type>::type cufmi::bowtie2::cuda::HitQueuesDeviceView::sink_storage_type |
Definition at line 170 of file proposal.h.
| typedef device_view_subtype<ScoringQueues::ssa_storage_type>::type cufmi::bowtie2::cuda::HitQueuesDeviceView::ssa_storage_type |
Definition at line 167 of file proposal.h.
| seed_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::hit |
hit info
Definition at line 176 of file proposal.h.
| loc_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::loc |
hit locations
Definition at line 178 of file proposal.h.
| loc_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::opposite_loc |
hit locations, opposite mate
Definition at line 181 of file proposal.h.
| score_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::opposite_score |
hit scores, opposite mate
Definition at line 182 of file proposal.h.
| sink_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::opposite_sink |
hit sinks, opposite mate
Definition at line 183 of file proposal.h.
| parent_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::parent |
hit -> read mapping
Definition at line 175 of file proposal.h.
| score_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::score |
hit scores
Definition at line 179 of file proposal.h.
| sink_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::sink |
hit sinks
Definition at line 180 of file proposal.h.
| ssa_storage_type cufmi::bowtie2::cuda::HitQueuesDeviceView::ssa |
hit ssa info
Definition at line 177 of file proposal.h.
1.8.4