Detailed description

This data structure represents a collection of hit arrays bound to a set of reads. For each read it stores an array of hits of arbitrary length.

Definition at line 32 of file proposal.h.

#include <proposal.h>

Public Types
enum	Mode { SingleHitPerRead = 0u, MultipleHitsPerRead = 1u }

typedef thrust::device_vector < uint32 >	links_storage_type

Public Methods
void	resize (const uint32 max_size)

void	setup (const uint32 n_hits_per_read, const uint32 in_reads)

bool	mode () const

ReadHitsIndexDeviceView	device_view ()

Member Typedef Documentation

Definition at line 34 of file proposal.h.

Enumerator
SingleHitPerRead
MultipleHitsPerRead

Definition at line 36 of file proposal.h.

ReadHitsIndexDeviceView cufmi::bowtie2::cuda::ReadHitsIndex::device_view ( )

bool cufmi::bowtie2::cuda::ReadHitsIndex::mode ( ) const

inline

Definition at line 51 of file proposal.h.

void cufmi::bowtie2::cuda::ReadHitsIndex::resize ( const uint32 max_size)

void cufmi::bowtie2::cuda::ReadHitsIndex::setup	(	const uint32	n_hits_per_read,
		const uint32	in_reads
	)

The documentation for this struct was generated from the following file: