cufmi::bowtie2::cuda::ReadHitsReference< ReadHitsIndexType, HitQueuesType > Struct Template Reference

Detailed description

template< typename ReadHitsIndexType, typename HitQueuesType>
struct cufmi::bowtie2::cuda::ReadHitsReference< ReadHitsIndexType, HitQueuesType >

A reference to the collection of hits bound to a given read

Definition at line 247 of file proposal.h.

#include <proposal.h>

Public Methods
	ReadHitsReference (ReadHitsIndexType &index, HitQueuesType &hits, const uint32 read_index)
uint32	size () const
CUFMI_FORCEINLINE CUFMI_HOST_DEVICE HitReference < HitQueuesType >	operator[] (const uint32 i) const

Constructor & Destructor Documentation

template<typename ReadHitsIndexType, typename HitQueuesType>

cufmi::bowtie2::cuda::ReadHitsReference< ReadHitsIndexType, HitQueuesType >::ReadHitsReference	(	ReadHitsIndexType &	index,
		HitQueuesType &	hits,
		const uint32	read_index
	)

constructor

Parameters

index	read -> hits index
hits	hits container
read_index	index of this read

Member Function Documentation

template<typename ReadHitsIndexType, typename HitQueuesType>

CUFMI_FORCEINLINE CUFMI_HOST_DEVICE HitReference<HitQueuesType> cufmi::bowtie2::cuda::ReadHitsReference< ReadHitsIndexType, HitQueuesType >::operator[]

(

const uint32

i)

const

return the i-th element

template<typename ReadHitsIndexType, typename HitQueuesType>

uint32 cufmi::bowtie2::cuda::ReadHitsReference< ReadHitsIndexType, HitQueuesType >::size

(

)

const

size of the hits vector

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/vs/proposal.h