extract_active_region_source_sink< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct extract_active_region_source_sink< string_set_type >

Definition at line 240 of file assembly_graph_inl.h.

#include <assembly_graph_inl.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	extract_active_region_source_sink (const string_set_type _string_set, const uint32 _kmer_size, const SequenceSetKmerCoord *_coords, const uint32 *_seq_active_region_ids, const uint32 *_global_to_UID_map, const uint32 *_global_to_sorted_map, uint32 *_source_ids, uint32 *_sink_ids)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	operator() (const uint32 global_coord_idx) const

Public Members
const string_set_type	string_set
const SequenceSetKmerCoord *	coords
const uint32 *	seq_active_region_ids
const uint32 *	global_to_UID_map
const uint32 *	global_to_sorted_map
uint32 *	source_ids
uint32 *	sink_ids
uint32	kmer_size

Constructor & Destructor Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE extract_active_region_source_sink< string_set_type >::extract_active_region_source_sink ( const string_set_type  _string_set, const uint32  _kmer_size, const SequenceSetKmerCoord *  _coords, const uint32 *  _seq_active_region_ids, const uint32 *  _global_to_UID_map, const uint32 *  _global_to_sorted_map, uint32 *  _source_ids, uint32 *  _sink_ids  )

inline

Definition at line 252 of file assembly_graph_inl.h.

Member Function Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void extract_active_region_source_sink< string_set_type >::operator() ( const uint32  global_coord_idx) const

inline

Definition at line 262 of file assembly_graph_inl.h.

Member Data Documentation

template<typename string_set_type >

const SequenceSetKmerCoord* extract_active_region_source_sink< string_set_type >::coords

Definition at line 243 of file assembly_graph_inl.h.

template<typename string_set_type >

const uint32* extract_active_region_source_sink< string_set_type >::global_to_sorted_map

Definition at line 246 of file assembly_graph_inl.h.

template<typename string_set_type >

const uint32* extract_active_region_source_sink< string_set_type >::global_to_UID_map

Definition at line 245 of file assembly_graph_inl.h.

template<typename string_set_type >

uint32 extract_active_region_source_sink< string_set_type >::kmer_size

Definition at line 249 of file assembly_graph_inl.h.

template<typename string_set_type >

const uint32* extract_active_region_source_sink< string_set_type >::seq_active_region_ids

Definition at line 244 of file assembly_graph_inl.h.

template<typename string_set_type >

uint32* extract_active_region_source_sink< string_set_type >::sink_ids

Definition at line 248 of file assembly_graph_inl.h.

template<typename string_set_type >

uint32* extract_active_region_source_sink< string_set_type >::source_ids

Definition at line 247 of file assembly_graph_inl.h.

template<typename string_set_type >

const string_set_type extract_active_region_source_sink< string_set_type >::string_set

Definition at line 242 of file assembly_graph_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/assembly_graph_inl.h