find_max_kmer_overlaps< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct find_max_kmer_overlaps< string_set_type >

Definition at line 696 of file kmers_inl.h.

#include <kmers_inl.h>

Public Types
typedef string_set_type::string_type	sequence

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	find_max_kmer_overlaps (const string_set_type _string_set, const SequenceSetKmerCoord *_coords, const uint32 _kmer_size)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	operator() (const uint32 idx) const

Public Members
const string_set_type	string_set
const SequenceSetKmerCoord *	coords
const uint32	kmer_size

Member Typedef Documentation

template<typename string_set_type>

typedef string_set_type::string_type find_max_kmer_overlaps< string_set_type >::sequence

Definition at line 698 of file kmers_inl.h.

Constructor & Destructor Documentation

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE find_max_kmer_overlaps< string_set_type >::find_max_kmer_overlaps ( const string_set_type  _string_set, const SequenceSetKmerCoord *  _coords, const uint32  _kmer_size  )

inline

Definition at line 704 of file kmers_inl.h.

Member Function Documentation

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 find_max_kmer_overlaps< string_set_type >::operator() ( const uint32  idx) const

inline

Definition at line 708 of file kmers_inl.h.

Member Data Documentation

template<typename string_set_type>

const SequenceSetKmerCoord* find_max_kmer_overlaps< string_set_type >::coords

Definition at line 700 of file kmers_inl.h.

template<typename string_set_type>

const uint32 find_max_kmer_overlaps< string_set_type >::kmer_size

Definition at line 701 of file kmers_inl.h.

template<typename string_set_type>

const string_set_type find_max_kmer_overlaps< string_set_type >::string_set

Definition at line 699 of file kmers_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/kmers_inl.h