genome_infixes< BAND_LEN > Struct Template Reference

Detailed description

template< uint32 BAND_LEN>
struct genome_infixes< BAND_LEN >

Definition at line 69 of file alignment.h.

#include <alignment.h>

Public Methods
NVBIO_HOST_DEVICE	genome_infixes (const uint32 genome_len, const io::ConstSequenceDataView reads)
NVBIO_HOST_DEVICE string_infix_coord_type	operator() (const uint2 diagonal) const

Public Members
const uint32	m_genome_len
const io::ConstSequenceDataView	m_reads

Constructor & Destructor Documentation

template<uint32 BAND_LEN>

NVBIO_HOST_DEVICE genome_infixes< BAND_LEN >::genome_infixes ( const uint32  genome_len, const io::ConstSequenceDataView  reads  )

inline

Definition at line 73 of file alignment.h.

Member Function Documentation

template<uint32 BAND_LEN>

NVBIO_HOST_DEVICE string_infix_coord_type genome_infixes< BAND_LEN >::operator() ( const uint2  diagonal) const

inline

Definition at line 79 of file alignment.h.

Member Data Documentation

template<uint32 BAND_LEN>

const uint32 genome_infixes< BAND_LEN >::m_genome_len

Definition at line 97 of file alignment.h.

template<uint32 BAND_LEN>

const io::ConstSequenceDataView genome_infixes< BAND_LEN >::m_reads

Definition at line 98 of file alignment.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/examples/qmap/alignment.h