NVBIO: kmer_word_extractor_functor< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct kmer_word_extractor_functor< string_set_type >

Definition at line 321 of file kmers_inl.h.

#include <kmers_inl.h>

Public Types
typedef string_set_type::string_type	sequence

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	kmer_word_extractor_functor (const string_set_type _string_set, const uint32 _dna_symbol_size, const SequenceSetKmerCoord *_coords, const uint32 _i)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	operator() (const uint32 kmer_idx) const

Public Members
const string_set_type	string_set

const uint32	dna_symbol_size

const uint32	symbol_offset

const uint32	symbols_per_word

const SequenceSetKmerCoord *	coords

const uint32	i

Member Typedef Documentation

template<typename string_set_type >

typedef string_set_type::string_type kmer_word_extractor_functor< string_set_type >::sequence

Definition at line 323 of file kmers_inl.h.

Constructor & Destructor Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE kmer_word_extractor_functor< string_set_type >::kmer_word_extractor_functor	(	const string_set_type	_string_set,
		const uint32	_dna_symbol_size,
		const SequenceSetKmerCoord *	_coords,
		const uint32	_i
	)

inline

Definition at line 332 of file kmers_inl.h.

Member Function Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 kmer_word_extractor_functor< string_set_type >::operator() ( const uint32 kmer_idx) const

inline

Definition at line 340 of file kmers_inl.h.

Member Data Documentation

template<typename string_set_type >

const SequenceSetKmerCoord* kmer_word_extractor_functor< string_set_type >::coords

Definition at line 328 of file kmers_inl.h.

template<typename string_set_type >

const uint32 kmer_word_extractor_functor< string_set_type >::dna_symbol_size

Definition at line 325 of file kmers_inl.h.

template<typename string_set_type >

const uint32 kmer_word_extractor_functor< string_set_type >::i

Definition at line 329 of file kmers_inl.h.

template<typename string_set_type >

const string_set_type kmer_word_extractor_functor< string_set_type >::string_set

Definition at line 324 of file kmers_inl.h.

template<typename string_set_type >

const uint32 kmer_word_extractor_functor< string_set_type >::symbol_offset

Definition at line 326 of file kmers_inl.h.

template<typename string_set_type >

const uint32 kmer_word_extractor_functor< string_set_type >::symbols_per_word

Definition at line 327 of file kmers_inl.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvMicroAssembly/kmers_inl.h