kmers_to_64b_functor< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct kmers_to_64b_functor< string_set_type >

Definition at line 229 of file kmers_inl.h.

#include <kmers_inl.h>

Public Types
typedef string_set_type::string_type	sequence

Public Methods
NVBIO_HOST_DEVICE	kmers_to_64b_functor (const uint32 _kmer_size, const uint32 _dna_symbol_size, const string_set_type _string_set)
NVBIO_HOST_DEVICE uint64	operator() (const SequenceSetKmerCoord kmer_coord) const

Public Members
const string_set_type	string_set
const uint32	kmer_size
const uint32	dna_symbol_size
const uint32	symbol_mask

Member Typedef Documentation

template<typename string_set_type>

typedef string_set_type::string_type kmers_to_64b_functor< string_set_type >::sequence

Definition at line 231 of file kmers_inl.h.

Constructor & Destructor Documentation

template<typename string_set_type>

NVBIO_HOST_DEVICE kmers_to_64b_functor< string_set_type >::kmers_to_64b_functor ( const uint32  _kmer_size, const uint32  _dna_symbol_size, const string_set_type  _string_set  )

inline

Definition at line 238 of file kmers_inl.h.

Member Function Documentation

template<typename string_set_type>

NVBIO_HOST_DEVICE uint64 kmers_to_64b_functor< string_set_type >::operator() ( const SequenceSetKmerCoord  kmer_coord) const

inline

Definition at line 243 of file kmers_inl.h.

Member Data Documentation

template<typename string_set_type>

const uint32 kmers_to_64b_functor< string_set_type >::dna_symbol_size

Definition at line 234 of file kmers_inl.h.

template<typename string_set_type>

const uint32 kmers_to_64b_functor< string_set_type >::kmer_size

Definition at line 233 of file kmers_inl.h.

template<typename string_set_type>

const string_set_type kmers_to_64b_functor< string_set_type >::string_set

Definition at line 232 of file kmers_inl.h.

template<typename string_set_type>

const uint32 kmers_to_64b_functor< string_set_type >::symbol_mask

Definition at line 235 of file kmers_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/kmers_inl.h