nvbio::DeviceBWTHandler< OutputIterator > Struct Template Reference

Detailed description

template< typename OutputIterator>
struct nvbio::DeviceBWTHandler< OutputIterator >

A SetBWTOutputHandler class to output a string-set BWT to a (potentially packed) device string

Definition at line 86 of file sufsort_utils.h.

#include <sufsort_utils.h>

Inheritance diagram for nvbio::DeviceBWTHandler< OutputIterator >:

Public Methods
	DeviceBWTHandler (OutputIterator _output)
void	process (const uint32 n_suffixes, const uint32 bits_per_symbol, const uint32 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids)
void	process (const uint32 n_suffixes, const uint8 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids)
Public Methods inherited from nvbio::SetBWTHandler
virtual	~SetBWTHandler ()

Public Members
OutputIterator	output
uint64	offset
nvbio::vector< device_tag, uint8 >	d_bwt

Constructor & Destructor Documentation

template<typename OutputIterator >

nvbio::DeviceBWTHandler< OutputIterator >::DeviceBWTHandler ( OutputIterator  _output)

inline

constructor

Definition at line 90 of file sufsort_utils.h.

Member Function Documentation

template<typename OutputIterator >

void nvbio::DeviceBWTHandler< OutputIterator >::process ( const uint32  n_suffixes, const uint32  bits_per_symbol, const uint32 *  bwt, const uint32  n_dollars, const uint64 *  dollar_pos, const uint64 *  dollar_ids  )

inlinevirtual

process a batch of BWT symbols

Reimplemented from nvbio::SetBWTHandler.

Definition at line 94 of file sufsort_utils.h.

template<typename OutputIterator >

void nvbio::DeviceBWTHandler< OutputIterator >::process ( const uint32  n_suffixes, const uint8 *  bwt, const uint32  n_dollars, const uint64 *  dollar_pos, const uint64 *  dollar_ids  )

inlinevirtual

process a batch of BWT symbols

Reimplemented from nvbio::SetBWTHandler.

Definition at line 107 of file sufsort_utils.h.

Member Data Documentation

template<typename OutputIterator >

nvbio::vector<device_tag,uint8> nvbio::DeviceBWTHandler< OutputIterator >::d_bwt

Definition at line 130 of file sufsort_utils.h.

template<typename OutputIterator >

uint64 nvbio::DeviceBWTHandler< OutputIterator >::offset

Definition at line 129 of file sufsort_utils.h.

template<typename OutputIterator >

OutputIterator nvbio::DeviceBWTHandler< OutputIterator >::output

Definition at line 128 of file sufsort_utils.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/sufsort/sufsort_utils.h