Detailed description

A FASTQ file implementing the FASTQ_stream model needed by FASTQ_reader

Definition at line 113 of file fastq.h.

#include <fastq.h>

Public Methods
	FASTQ_file (const uint32 buffer_size=64536u)

	FASTQ_file (const char *filename, const uint32 buffer_size=64536u)

void	open (const char *filename)

	~FASTQ_file ()

bool	valid () const

uint8	get ()

Constructor & Destructor Documentation

nvbio::FASTQ_file::FASTQ_file ( const uint32 buffer_size = 64536u)

inline

constructor

Definition at line 48 of file fastq_inl.h.

inline

constructor

Definition at line 58 of file fastq_inl.h.

nvbio::FASTQ_file::~FASTQ_file ( )

inline

destructor

Definition at line 78 of file fastq_inl.h.

uint8 nvbio::FASTQ_file::get ( )

inline

get the next character, or 255 if EOF

Definition at line 87 of file fastq_inl.h.

void nvbio::FASTQ_file::open ( const char * filename)

inline

open a new file

Definition at line 67 of file fastq_inl.h.

bool nvbio::FASTQ_file::valid ( ) const

inline

return whether the file is valid

Definition at line 133 of file fastq.h.

The documentation for this struct was generated from the following files: