nvbio::HostBWTHandler< OutputIterator > Struct Template Reference

Detailed description

template< typename OutputIterator>
struct nvbio::HostBWTHandler< OutputIterator >

A SetBWTOutputHandler class to output a string-set BWT to a (potentially packed) host string

Definition at line 136 of file sufsort_utils.h.

#include <sufsort_utils.h>

Inheritance diagram for nvbio::HostBWTHandler< OutputIterator >:

Public Methods
	HostBWTHandler (OutputIterator _output)
template<typename bwt_iterator >
void	do_process (const uint32 n_suffixes, const bwt_iterator bwt)
void	process (const uint32 n_suffixes, const uint32 bits_per_symbol, const uint32 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids)
void	process (const uint32 n_suffixes, const uint8 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids)
Public Methods inherited from nvbio::SetBWTHandler
virtual	~SetBWTHandler ()

Public Members
OutputIterator	output

Constructor & Destructor Documentation

template<typename OutputIterator >

nvbio::HostBWTHandler< OutputIterator >::HostBWTHandler ( OutputIterator  _output)

inline

Definition at line 138 of file sufsort_utils.h.

Member Function Documentation

template<typename OutputIterator >

template<typename bwt_iterator >

void nvbio::HostBWTHandler< OutputIterator >::do_process ( const uint32  n_suffixes, const bwt_iterator  bwt  )

inline

process a batch of BWT symbols

Definition at line 143 of file sufsort_utils.h.

template<typename OutputIterator >

void nvbio::HostBWTHandler< OutputIterator >::process ( const uint32  n_suffixes, const uint32  bits_per_symbol, const uint32 *  bwt, const uint32  n_dollars, const uint64 *  dollar_pos, const uint64 *  dollar_ids  )

inlinevirtual

process a batch of BWT symbols

Reimplemented from nvbio::SetBWTHandler.

Definition at line 155 of file sufsort_utils.h.

template<typename OutputIterator >

void nvbio::HostBWTHandler< OutputIterator >::process ( const uint32  n_suffixes, const uint8 *  bwt, const uint32  n_dollars, const uint64 *  dollar_pos, const uint64 *  dollar_ids  )

inlinevirtual

process a batch of BWT symbols

Reimplemented from nvbio::SetBWTHandler.

Definition at line 173 of file sufsort_utils.h.

Member Data Documentation

template<typename OutputIterator >

OutputIterator nvbio::HostBWTHandler< OutputIterator >::output

Definition at line 183 of file sufsort_utils.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/sufsort/sufsort_utils.h