NVBIO: nvbio::MEMRange< coord_type > Struct Template Reference

Detailed description

template< typename coord_type>
struct nvbio::MEMRange< coord_type >

: A MEM range struct, including:

the index range,
the string id,
the span of the string covered by the MEM

Definition at line 167 of file mem.h.

#include <mem.h>

Public Types
typedef vector_type < coord_type, 4u >::type	base_type

typedef vector_type < coord_type, 2u >::type	range_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMRange ()

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMRange (const base_type vec)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMRange (const uint2 range, const uint32 string_id, const uint2 span, const bool flag=false)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMRange (const uint2 range, const uint32 string_id, const uint32 span_begin, const uint32 span_end, const bool flag=false)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	set_group_flag ()

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	group_flag () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE range_type	range () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type	range_size () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	string_id () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint2	span () const

Public Members
base_type	coords

Static Public Members
static const uint32	GROUP_FLAG = 1u << 31

Member Typedef Documentation

template<typename coord_type >

typedef vector_type<coord_type,4u>::type nvbio::MEMRange< coord_type >::base_type

Definition at line 169 of file mem.h.

template<typename coord_type >

typedef vector_type<coord_type,2u>::type nvbio::MEMRange< coord_type >::range_type

Definition at line 170 of file mem.h.

Constructor & Destructor Documentation

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMRange< coord_type >::MEMRange ( )

inline

Definition at line 175 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMRange< coord_type >::MEMRange ( const base_type vec)

inline

Definition at line 178 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMRange< coord_type >::MEMRange	(	const uint2	range,
		const uint32	string_id,
		const uint2	span,
		const bool	flag = `false`
	)

inline

Definition at line 181 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMRange< coord_type >::MEMRange	(	const uint2	range,
		const uint32	string_id,
		const uint32	span_begin,
		const uint32	span_end,
		const bool	flag = `false`
	)

inline

Definition at line 193 of file mem.h.

Member Function Documentation

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool nvbio::MEMRange< coord_type >::group_flag ( ) const

inline

Definition at line 208 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE range_type nvbio::MEMRange< coord_type >::range ( ) const

inline

Definition at line 211 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type nvbio::MEMRange< coord_type >::range_size ( ) const

inline

Definition at line 214 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::MEMRange< coord_type >::set_group_flag ( )

inline

Definition at line 205 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint2 nvbio::MEMRange< coord_type >::span ( ) const

inline

Definition at line 220 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::MEMRange< coord_type >::string_id ( ) const

inline

Definition at line 217 of file mem.h.

Member Data Documentation

template<typename coord_type >

base_type nvbio::MEMRange< coord_type >::coords

Definition at line 222 of file mem.h.

template<typename coord_type >

const uint32 nvbio::MEMRange< coord_type >::GROUP_FLAG = 1u << 31

static

Definition at line 172 of file mem.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/fmindex/mem.h