NVBIO: nvbio::Prefix< StringType, CoordType > Struct Template Reference

Detailed description

template< typename StringType, typename CoordType>
struct nvbio::Prefix< StringType, CoordType >

A class to represent a string prefix, i.e. an arbitrarily placed substring

Template Parameters

StringType	the underlying string type
CoordType	the type of prefix coordinates, string_prefix_coord_type for strings, string_set_prefix_coord_type for string-sets
CoordDim	the number of coordinates, 1 for strings, 2 for string-sets

Definition at line 245 of file prefix.h.

#include <prefix.h>

Inheritance diagram for nvbio::Prefix< StringType, CoordType >:

Public Types
typedef PrefixCore< StringType, CoordType, vector_traits < CoordType >::DIM >	core_type

typedef StringType	string_type

typedef CoordType	coord_type

typedef std::iterator_traits < string_type >::value_type	symbol_type

typedef std::iterator_traits < string_type >::value_type	value_type

typedef std::iterator_traits < string_type >::reference	reference

typedef string_traits < StringType >::iterator	iterator

typedef string_traits < StringType >::const_iterator	const_iterator

typedef string_traits < StringType > ::forward_iterator	forward_iterator

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	Prefix ()

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	Prefix (const string_type string, const coord_type infix)

Static Public Members
static const uint32	SYMBOL_SIZE = string_traits<StringType>::SYMBOL_SIZE

Member Typedef Documentation

template<typename StringType, typename CoordType>

typedef string_traits<StringType>::const_iterator nvbio::Prefix< StringType, CoordType >::const_iterator

Definition at line 258 of file prefix.h.

template<typename StringType, typename CoordType>

typedef CoordType nvbio::Prefix< StringType, CoordType >::coord_type

Definition at line 251 of file prefix.h.

template<typename StringType, typename CoordType>

typedef PrefixCore< StringType, CoordType, vector_traits<CoordType>::DIM > nvbio::Prefix< StringType, CoordType >::core_type

Definition at line 249 of file prefix.h.

template<typename StringType, typename CoordType>

typedef string_traits<StringType>::forward_iterator nvbio::Prefix< StringType, CoordType >::forward_iterator

Definition at line 259 of file prefix.h.

template<typename StringType, typename CoordType>

typedef string_traits<StringType>::iterator nvbio::Prefix< StringType, CoordType >::iterator

Definition at line 257 of file prefix.h.

template<typename StringType, typename CoordType>

typedef std::iterator_traits<string_type>::reference nvbio::Prefix< StringType, CoordType >::reference

Definition at line 255 of file prefix.h.

template<typename StringType, typename CoordType>

typedef StringType nvbio::Prefix< StringType, CoordType >::string_type

Definition at line 250 of file prefix.h.

template<typename StringType, typename CoordType>

typedef std::iterator_traits<string_type>::value_type nvbio::Prefix< StringType, CoordType >::symbol_type

Definition at line 253 of file prefix.h.

template<typename StringType, typename CoordType>

typedef std::iterator_traits<string_type>::value_type nvbio::Prefix< StringType, CoordType >::value_type

Definition at line 254 of file prefix.h.

Constructor & Destructor Documentation

template<typename StringType, typename CoordType>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::Prefix< StringType, CoordType >::Prefix ( )

inline

constructor

Definition at line 264 of file prefix.h.

template<typename StringType, typename CoordType>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::Prefix< StringType, CoordType >::Prefix	(	const string_type	string,
		const coord_type	infix
	)

inline

constructor

Definition at line 269 of file prefix.h.

Member Data Documentation

template<typename StringType, typename CoordType>

const uint32 nvbio::Prefix< StringType, CoordType >::SYMBOL_SIZE = string_traits<StringType>::SYMBOL_SIZE

static

Definition at line 247 of file prefix.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/strings/prefix.h