nvbio::QGroupIndexHost Struct Reference

Detailed description

A host-side q-group index (see Q-Group Index Module)

Definition at line 164 of file qgroup.h.

#include <qgroup.h>

Public Types
typedef host_tag	system_tag
typedef thrust::host_vector < uint32 >	vector_type
typedef uint32	coord_type
typedef QGroupIndexView	plain_view_type
typedef ConstQGroupIndexView	const_plain_view_type

Public Methods
uint64	used_host_memory () const
uint64	used_device_memory () const

Public Members
uint32	Q
uint32	n_qgrams
uint32	n_unique_qgrams
vector_type	I
vector_type	S
vector_type	SS
vector_type	P

Static Public Members
static const uint32	WORD_SIZE = 32

Member Typedef Documentation

typedef ConstQGroupIndexView nvbio::QGroupIndexHost::const_plain_view_type

Definition at line 173 of file qgroup.h.

typedef uint32 nvbio::QGroupIndexHost::coord_type

Definition at line 171 of file qgroup.h.

typedef QGroupIndexView nvbio::QGroupIndexHost::plain_view_type

Definition at line 172 of file qgroup.h.

typedef host_tag nvbio::QGroupIndexHost::system_tag

Definition at line 168 of file qgroup.h.

typedef thrust::host_vector<uint32> nvbio::QGroupIndexHost::vector_type

Definition at line 170 of file qgroup.h.

Member Function Documentation

uint64 nvbio::QGroupIndexHost::used_device_memory ( ) const

inline

return the amount of device memory used

Definition at line 187 of file qgroup.h.

uint64 nvbio::QGroupIndexHost::used_host_memory ( ) const

inline

return the amount of device memory used

Definition at line 177 of file qgroup.h.

Member Data Documentation

vector_type nvbio::QGroupIndexHost::I

Definition at line 192 of file qgroup.h.

uint32 nvbio::QGroupIndexHost::n_qgrams

Definition at line 190 of file qgroup.h.

uint32 nvbio::QGroupIndexHost::n_unique_qgrams

Definition at line 191 of file qgroup.h.

vector_type nvbio::QGroupIndexHost::P

Definition at line 195 of file qgroup.h.

uint32 nvbio::QGroupIndexHost::Q

Definition at line 189 of file qgroup.h.

vector_type nvbio::QGroupIndexHost::S

Definition at line 193 of file qgroup.h.

vector_type nvbio::QGroupIndexHost::SS

Definition at line 194 of file qgroup.h.

const uint32 nvbio::QGroupIndexHost::WORD_SIZE = 32

static

Definition at line 166 of file qgroup.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/qgram/qgroup.h