NVBIO: nvbio::StringSSAHandler< output_iterator > Struct Template Reference

Detailed description

template< typename output_iterator>
struct nvbio::StringSSAHandler< output_iterator >

a utility StringSuffixHandler to retain a Sampled Suffix Array

Definition at line 450 of file sufsort_utils.h.

#include <sufsort_utils.h>

Public Methods
	StringSSAHandler (const uint32 _string_len, const uint32 _mod, output_iterator _output)

void	process_batch (const uint32 n_suffixes, const uint32 *d_suffixes)

void	process_scattered (const uint32 n_suffixes, const uint32 d_suffixes, const uint32 d_slots)

Public Members
const uint32	string_len

const uint32	mod

uint32	n_output

output_iterator	output

thrust::host_vector< uint32 >	h_slots

thrust::host_vector< uint32 >	h_suffixes

Constructor & Destructor Documentation

template<typename output_iterator>

nvbio::StringSSAHandler< output_iterator >::StringSSAHandler	(	const uint32	_string_len,
		const uint32	_mod,
		output_iterator	_output
	)

inline

Definition at line 454 of file sufsort_utils.h.

Member Function Documentation

template<typename output_iterator>

void nvbio::StringSSAHandler< output_iterator >::process_batch	(	const uint32	n_suffixes,
		const uint32 *	d_suffixes
	)

inline

Definition at line 469 of file sufsort_utils.h.

template<typename output_iterator>

void nvbio::StringSSAHandler< output_iterator >::process_scattered	(	const uint32	n_suffixes,
		const uint32 *	d_suffixes,
		const uint32 *	d_slots
	)

inline

Definition at line 496 of file sufsort_utils.h.

Member Data Documentation

template<typename output_iterator>

thrust::host_vector<uint32> nvbio::StringSSAHandler< output_iterator >::h_slots

Definition at line 529 of file sufsort_utils.h.

template<typename output_iterator>

thrust::host_vector<uint32> nvbio::StringSSAHandler< output_iterator >::h_suffixes

Definition at line 530 of file sufsort_utils.h.

template<typename output_iterator>

const uint32 nvbio::StringSSAHandler< output_iterator >::mod

Definition at line 526 of file sufsort_utils.h.

template<typename output_iterator>

uint32 nvbio::StringSSAHandler< output_iterator >::n_output

Definition at line 527 of file sufsort_utils.h.

template<typename output_iterator>

output_iterator nvbio::StringSSAHandler< output_iterator >::output

Definition at line 528 of file sufsort_utils.h.

template<typename output_iterator>

const uint32 nvbio::StringSSAHandler< output_iterator >::string_len

Definition at line 525 of file sufsort_utils.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/sufsort/sufsort_utils.h