Detailed description

A compact representation of an alignment result, specifying the score and the start/terminal cells

Definition at line 124 of file alignment_base.h.

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	Alignment ()

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	Alignment (const ScoreType _score, const uint2 _source, const uint2 _sink)

Public Members
ScoreType	score
	alignment score More...

uint2	source
	alignment start cells in the pattern & text More...

uint2	sink
	alignment terminal cells in the pattern & text More...

Constructor & Destructor Documentation

template<typename ScoreType>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::aln::Alignment< ScoreType >::Alignment ( )

inline

Definition at line 127 of file alignment_base.h.

template<typename ScoreType>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::aln::Alignment< ScoreType >::Alignment	(	const ScoreType	_score,
		const uint2	_source,
		const uint2	_sink
	)

inline

Definition at line 130 of file alignment_base.h.

template<typename ScoreType>

ScoreType nvbio::aln::Alignment< ScoreType >::score

alignment score

Definition at line 132 of file alignment_base.h.

template<typename ScoreType>

uint2 nvbio::aln::Alignment< ScoreType >::sink

alignment terminal cells in the pattern & text

Definition at line 134 of file alignment_base.h.

template<typename ScoreType>

uint2 nvbio::aln::Alignment< ScoreType >::source

alignment start cells in the pattern & text

Definition at line 133 of file alignment_base.h.

The documentation for this struct was generated from the following file: