nvbio::aln::BatchedAlignmentScore< stream_type, DeviceWarpScheduler > Struct Template Reference

Detailed description

template< typename stream_type>
struct nvbio::aln::BatchedAlignmentScore< stream_type, DeviceWarpScheduler >

DeviceWarpScheduler specialization of BatchedAlignmentScore.

Template Parameters

stream_type

the stream of alignment jobs

Definition at line 443 of file batched_inl.h.

#include <batched_inl.h>

Public Types
typedef stream_type::aligner_type	aligner_type
typedef column_storage_type < aligner_type >::type	cell_type

Public Methods
void	enact (stream_type stream, uint64 temp_size=0u, uint8 *temp=NULL)

Static Public Methods
static uint64	min_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size)
static uint64	max_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size)

Static Public Members
static const uint32	BLOCKDIM = 128

Member Typedef Documentation

template<typename stream_type >

typedef stream_type::aligner_type nvbio::aln::BatchedAlignmentScore< stream_type, DeviceWarpScheduler >::aligner_type

Definition at line 447 of file batched_inl.h.

template<typename stream_type >

typedef column_storage_type<aligner_type>::type nvbio::aln::BatchedAlignmentScore< stream_type, DeviceWarpScheduler >::cell_type

Definition at line 448 of file batched_inl.h.

Member Data Documentation

template<typename stream_type >

const uint32 nvbio::aln::BatchedAlignmentScore< stream_type, DeviceWarpScheduler >::BLOCKDIM = 128

static

Definition at line 445 of file batched_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/alignment/batched_inl.h