nvbio::aln::BestSink< ScoreType > Struct Template Reference

Detailed description

template< typename ScoreType>
struct nvbio::aln::BestSink< ScoreType >

A sink for valid alignments, mantaining only a single best alignment

Definition at line 69 of file sink.h.

#include <sink.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	BestSink ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	invalidate ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	report (const ScoreType _score, const uint2 _sink)

Public Members
ScoreType	score
uint2	sink

Constructor & Destructor Documentation

template<typename ScoreType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::aln::BestSink< ScoreType >::BestSink

(

)

Definition at line 40 of file sink_inl.h.

Member Function Documentation

template<typename ScoreType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::aln::BestSink< ScoreType >::invalidate

(

)

invalidate

Definition at line 46 of file sink_inl.h.

template<typename ScoreType>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::aln::BestSink< ScoreType >::report	(	const ScoreType	_score,
		const uint2	_sink
	)

store a valid alignment

Parameters

_score	alignment's score
_sink	alignment's end

Definition at line 59 of file sink_inl.h.

Member Data Documentation

template<typename ScoreType>

ScoreType nvbio::aln::BestSink< ScoreType >::score

Definition at line 87 of file sink.h.

template<typename ScoreType>

uint2 nvbio::aln::BestSink< ScoreType >::sink

Definition at line 88 of file sink.h.

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The documentation for this struct was generated from the following files:

• E:/git/nvbio/nvbio/alignment/sink.h
• E:/git/nvbio/nvbio/alignment/sink_inl.h