nvbio::aln::EditDistanceAligner< T_TYPE, AlgorithmType > Struct Template Reference

Detailed description

template< AlignmentType T_TYPE, typename AlgorithmType = PatternBlockingTag>
struct nvbio::aln::EditDistanceAligner< T_TYPE, AlgorithmType >

An edit distance alignment algorithm, see Aligners

Template Parameters

T_TYPE	specifies whether the alignment is SEMI_GLOBAL/GLOBAL
AlgorithmType	specifies the Algorithm Tag

Definition at line 180 of file alignment_base.h.

#include <alignment_base.h>

Public Types
typedef EditDistanceTag	aligner_tag
	the Aligner Tag More...
typedef AlgorithmType	algorithm_tag
	the Algorithm Tag More...

Static Public Members
static const AlignmentType	TYPE = T_TYPE
	the AlignmentType More...

Member Typedef Documentation

template<AlignmentType T_TYPE, typename AlgorithmType = PatternBlockingTag>

typedef AlgorithmType nvbio::aln::EditDistanceAligner< T_TYPE, AlgorithmType >::algorithm_tag

the Algorithm Tag

Definition at line 185 of file alignment_base.h.

template<AlignmentType T_TYPE, typename AlgorithmType = PatternBlockingTag>

typedef EditDistanceTag nvbio::aln::EditDistanceAligner< T_TYPE, AlgorithmType >::aligner_tag

the Aligner Tag

Definition at line 184 of file alignment_base.h.

Member Data Documentation

template<AlignmentType T_TYPE, typename AlgorithmType = PatternBlockingTag>

const AlignmentType nvbio::aln::EditDistanceAligner< T_TYPE, AlgorithmType >::TYPE = T_TYPE

static

the AlignmentType

Definition at line 182 of file alignment_base.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/alignment/alignment_base.h