template<
uint32 BAND_LEN,
AlignmentType TYPE,
typename algorithm_tag,
typename checkpoint_type>
struct nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type >
Definition at line 142 of file gotoh_inl.h.
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NVBIO_FORCEINLINE NVBIO_HOST_DEVICE | GotohCheckpointedScoringContext (checkpoint_type checkpoint) |
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template<typename column_type , typename scoring_type , typename score_type > |
NVBIO_FORCEINLINE
NVBIO_HOST_DEVICE void | init (const uint32 j, const uint32 N, column_type &column, const scoring_type &scoring, const score_type zero, const score_type infimum) |
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template<typename column_type > |
NVBIO_FORCEINLINE
NVBIO_HOST_DEVICE void | previous_column (const uint32 j, const uint32 N, const column_type column) |
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template<typename column_type > |
NVBIO_FORCEINLINE
NVBIO_HOST_DEVICE void | last_column (const uint32 j, const uint32 M, const uint32 N, const column_type column) |
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template<typename score_type > |
NVBIO_FORCEINLINE
NVBIO_HOST_DEVICE void | new_cell (const uint32 i, const uint32 N, const uint32 j, const uint32 M, const score_type score, const DirectionVector dir, const DirectionVector edir, const DirectionVector fdir) |
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