nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE > Struct Template Reference

Detailed description

template< uint32 ALPHABET_SIZE>
struct nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE >

A set of Myers bit-vectors for generic alphabets

Definition at line 45 of file myers_banded_inl.h.

#include <myers_banded_inl.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MyersBitVectors ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	load (const uint8 c, const uint32 v)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	get (const uint8 c) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	shift ()

Public Members
uint32	B [ALPHABET_SIZE]

Constructor & Destructor Documentation

template<uint32 ALPHABET_SIZE>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE >::MyersBitVectors ( )

inline

Definition at line 48 of file myers_banded_inl.h.

Member Function Documentation

template<uint32 ALPHABET_SIZE>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE >::get ( const uint8  c) const

inline

Definition at line 59 of file myers_banded_inl.h.

template<uint32 ALPHABET_SIZE>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE >::load ( const uint8  c, const uint32  v  )

inline

Definition at line 56 of file myers_banded_inl.h.

template<uint32 ALPHABET_SIZE>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE >::shift ( )

inline

Definition at line 62 of file myers_banded_inl.h.

Member Data Documentation

template<uint32 ALPHABET_SIZE>

uint32 nvbio::aln::priv::MyersBitVectors< ALPHABET_SIZE >::B[ALPHABET_SIZE]

Definition at line 69 of file myers_banded_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/alignment/myers/myers_banded_inl.h