Definition at line 105 of file alignment.h.
#include <alignment.h>
| nvbio::alndiff::AlignmentPair::AlignmentPair |
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| uint16 nvbio::alndiff::AlignmentPair::dels |
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| uint8 nvbio::alndiff::AlignmentPair::ed |
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const |
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| bool nvbio::alndiff::AlignmentPair::has_second |
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const |
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| uint16 nvbio::alndiff::AlignmentPair::ins |
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| bool nvbio::alndiff::AlignmentPair::is_ambiguous_paired |
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const |
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| bool nvbio::alndiff::AlignmentPair::is_mapped |
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const |
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| bool nvbio::alndiff::AlignmentPair::is_mapped_paired |
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const |
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| bool nvbio::alndiff::AlignmentPair::is_mapped_unpaired |
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const |
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| bool nvbio::alndiff::AlignmentPair::is_unique_paired |
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const |
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| uint16 nvbio::alndiff::AlignmentPair::mapped_read_bases |
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const |
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| uint16 nvbio::alndiff::AlignmentPair::mapped_ref_bases |
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| uint8 nvbio::alndiff::AlignmentPair::mapQ |
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const |
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| uint8 nvbio::alndiff::AlignmentPair::n_gape |
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const |
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| uint8 nvbio::alndiff::AlignmentPair::n_gapo |
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const |
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| uint8 nvbio::alndiff::AlignmentPair::n_mm |
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const |
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| uint32 nvbio::alndiff::AlignmentPair::read_id |
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| uint32 nvbio::alndiff::AlignmentPair::read_len |
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const |
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| int32 nvbio::alndiff::AlignmentPair::score |
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const |
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| int32 nvbio::alndiff::AlignmentPair::sec_score |
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const |
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| uint16 nvbio::alndiff::AlignmentPair::subs |
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const |
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| uint16 nvbio::alndiff::AlignmentPair::trimmed |
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const |
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| Alignment nvbio::alndiff::AlignmentPair::mate1 |
| Alignment nvbio::alndiff::AlignmentPair::mate2 |
The documentation for this struct was generated from the following file:
1.8.4