Detailed description

Definition at line 96 of file input_thread.h.

Inheritance diagram for nvbio::bowtie2::cuda::InputThreadPE:

Public Methods
	InputThreadPE (io::SequenceDataStream read_data_stream1, io::SequenceDataStream read_data_stream2, Stats &_stats, const uint32 batch_size, const uint32 read_length)

void	run ()

std::pair < io::SequenceDataHost , io::SequenceDataHost >	next (uint32 *offset=NULL)

void	release (std::pair< io::SequenceDataHost , io::SequenceDataHost > read_data)

uint32	batch_size () const

Public Methods inherited from nvbio::Thread< InputThreadPE >
void	create ()
	create the thread More...

void	join ()
	join the thread More...

Public Methods inherited from nvbio::ThreadBase
	ThreadBase ()

	~ThreadBase ()

void	set_id (const uint32 id)

uint32	get_id () const

void	create (void (func)(void ), void arg)
	create the thread More...

void	join ()
	join the thread More...

Constructor & Destructor Documentation

nvbio::bowtie2::cuda::InputThreadPE::InputThreadPE	(	io::SequenceDataStream *	read_data_stream1,
		io::SequenceDataStream *	read_data_stream2,
		Stats &	_stats,
		const uint32	batch_size,
		const uint32	read_length
	)

inline

Definition at line 100 of file input_thread.h.

uint32 nvbio::bowtie2::cuda::InputThreadPE::batch_size ( ) const

inline

Definition at line 116 of file input_thread.h.

std::pair< io::SequenceDataHost *, io::SequenceDataHost * > nvbio::bowtie2::cuda::InputThreadPE::next ( uint32 * offset = NULL)

Definition at line 298 of file input_thread.cpp.

void nvbio::bowtie2::cuda::InputThreadPE::release ( std::pair< io::SequenceDataHost *, io::SequenceDataHost * > read_data)

Definition at line 329 of file input_thread.cpp.

void nvbio::bowtie2::cuda::InputThreadPE::run ( )

Definition at line 184 of file input_thread.cpp.

const uint32 nvbio::bowtie2::cuda::InputThreadPE::BUFFERS = 4

static

Definition at line 98 of file input_thread.h.

The documentation for this struct was generated from the following files: