Detailed description

Definition at line 48 of file input_thread.h.

Inheritance diagram for nvbio::bowtie2::cuda::InputThreadSE:

Public Methods
	InputThreadSE (io::SequenceDataStream *read_data_stream, Stats &_stats, const uint32 batch_size, const uint32 read_length)

void	run ()

io::SequenceDataHost *	next (uint32 *offset=NULL)

void	release (io::SequenceDataHost *read_data)

uint32	batch_size () const

Public Methods inherited from nvbio::Thread< InputThreadSE >
void	create ()
	create the thread More...

void	join ()
	join the thread More...

Public Methods inherited from nvbio::ThreadBase
	ThreadBase ()

	~ThreadBase ()

void	set_id (const uint32 id)

uint32	get_id () const

void	create (void (func)(void ), void arg)
	create the thread More...

void	join ()
	join the thread More...

Constructor & Destructor Documentation

nvbio::bowtie2::cuda::InputThreadSE::InputThreadSE	(	io::SequenceDataStream *	read_data_stream,
		Stats &	_stats,
		const uint32	batch_size,
		const uint32	read_length
	)

inline

Definition at line 52 of file input_thread.h.

uint32 nvbio::bowtie2::cuda::InputThreadSE::batch_size ( ) const

inline

Definition at line 68 of file input_thread.h.

io::SequenceDataHost * nvbio::bowtie2::cuda::InputThreadSE::next ( uint32 * offset = NULL)

Definition at line 149 of file input_thread.cpp.

void nvbio::bowtie2::cuda::InputThreadSE::release ( io::SequenceDataHost * read_data)

Definition at line 177 of file input_thread.cpp.

void nvbio::bowtie2::cuda::InputThreadSE::run ( )

Definition at line 42 of file input_thread.cpp.

const uint32 nvbio::bowtie2::cuda::InputThreadSE::BUFFERS = 4

static

Definition at line 50 of file input_thread.h.

The documentation for this struct was generated from the following files: