NVBIO: nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData > Struct Template Reference

Detailed description

template< typename MapqCalculator, typename ReadData>
struct nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >

Definition at line 49 of file aligner_best_approx.h.

#include <aligner_best_approx.h>

Public Types
typedef uint32	argument_type

typedef uint8	result_type

Public Methods
	MapqFunctorSE (MapqCalculator _mapq_eval, const io::Alignment *_best_data, const uint32 _best_stride, const ReadData _read_data)

NVBIO_HOST_DEVICE uint8	operator() (const uint32 read_id) const

Public Members
const MapqCalculator	mapq_eval

const io::Alignment *	best_data

const uint32	best_stride

const ReadData	read_data

Member Typedef Documentation

template<typename MapqCalculator, typename ReadData>

typedef uint32 nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::argument_type

Definition at line 51 of file aligner_best_approx.h.

template<typename MapqCalculator, typename ReadData>

typedef uint8 nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::result_type

Definition at line 52 of file aligner_best_approx.h.

Constructor & Destructor Documentation

template<typename MapqCalculator, typename ReadData>

nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::MapqFunctorSE	(	MapqCalculator	_mapq_eval,
		const io::Alignment *	_best_data,
		const uint32	_best_stride,
		const ReadData	_read_data
	)

inline

Definition at line 54 of file aligner_best_approx.h.

Member Function Documentation

template<typename MapqCalculator, typename ReadData>

NVBIO_HOST_DEVICE uint8 nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::operator() ( const uint32 read_id) const

inline

Definition at line 65 of file aligner_best_approx.h.

Member Data Documentation

template<typename MapqCalculator, typename ReadData>

const io::Alignment* nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::best_data

Definition at line 79 of file aligner_best_approx.h.

template<typename MapqCalculator, typename ReadData>

const uint32 nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::best_stride

Definition at line 80 of file aligner_best_approx.h.

template<typename MapqCalculator, typename ReadData>

const MapqCalculator nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::mapq_eval

Definition at line 78 of file aligner_best_approx.h.

template<typename MapqCalculator, typename ReadData>

const ReadData nvbio::bowtie2::cuda::MapqFunctorSE< MapqCalculator, ReadData >::read_data

Definition at line 81 of file aligner_best_approx.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvBowtie/bowtie2/cuda/aligner_best_approx.h