nvbio::io::Cigar Struct Reference

Detailed description

A tight 16-bit CIGAR element representation

Definition at line 57 of file alignments.h.

#include <alignments.h>

Public Types
enum	Operation { SUBSTITUTION = 0, INSERTION = 1, DELETION = 2, SOFT_CLIPPING = 3 }

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	Cigar ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	Cigar (const uint8 type, const uint16 len)

Public Members
uint16	m_type:2
uint16	m_len:14

Member Enumeration Documentation

enum nvbio::io::Cigar::Operation

The list of CIGAR operations

Enumerator
SUBSTITUTION
INSERTION
DELETION
SOFT_CLIPPING

Definition at line 61 of file alignments.h.

Constructor & Destructor Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::io::Cigar::Cigar ( )

inline

Definition at line 69 of file alignments.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::io::Cigar::Cigar ( const uint8  type, const uint16  len  )

inline

Definition at line 72 of file alignments.h.

Member Data Documentation

uint16 nvbio::io::Cigar::m_len

Definition at line 74 of file alignments.h.

uint16 nvbio::io::Cigar::m_type

Definition at line 74 of file alignments.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/io/alignments.h