nvbio::io::DebugOutput::DbgInfo Struct Reference

Detailed description

Definition at line 54 of file output_debug.h.

#include <output_debug.h>

Public Types
enum	{   PAIRED = 1, PROPER_PAIR = 2, UNMAPPED = 4, MATE_UNMAPPED = 8,   REVERSE = 16, MATE_REVERSE = 32, READ_1 = 64, READ_2 = 128,   SECONDARY = 256, QC_FAILED = 512, DUPLICATE = 1024 }

Public Members
uint32	flag
uint32	ref_id
uint8	mate
uint8	mapQ
uint8	ed
uint8	pad
uint16	subs:16
uint8	ins
uint8	dels
uint8	mms
uint8	gapo
uint8	gape
uint8	has_second
int32	score
int32	sec_score

Member Enumeration Documentation

anonymous enum

Enumerator
PAIRED
PROPER_PAIR
UNMAPPED
MATE_UNMAPPED
REVERSE
MATE_REVERSE
READ_1
READ_2
SECONDARY
QC_FAILED
DUPLICATE

Definition at line 56 of file output_debug.h.

Member Data Documentation

uint8 nvbio::io::DebugOutput::DbgInfo::dels

Definition at line 80 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::ed

Definition at line 75 of file output_debug.h.

uint32 nvbio::io::DebugOutput::DbgInfo::flag

Definition at line 70 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::gape

Definition at line 84 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::gapo

Definition at line 83 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::has_second

Definition at line 85 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::ins

Definition at line 79 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::mapQ

Definition at line 74 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::mate

Definition at line 73 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::mms

Definition at line 82 of file output_debug.h.

uint8 nvbio::io::DebugOutput::DbgInfo::pad

Definition at line 76 of file output_debug.h.

uint32 nvbio::io::DebugOutput::DbgInfo::ref_id

Definition at line 71 of file output_debug.h.

int32 nvbio::io::DebugOutput::DbgInfo::score

Definition at line 87 of file output_debug.h.

int32 nvbio::io::DebugOutput::DbgInfo::sec_score

Definition at line 88 of file output_debug.h.

uint16 nvbio::io::DebugOutput::DbgInfo::subs

Definition at line 78 of file output_debug.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/io/output/output_debug.h