nvbio::io::PairedAlignments Struct Reference

Detailed description

A simple data-structure to hold paired alignments

Definition at line 199 of file alignments.h.

#include <alignments.h>

Public Methods
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE	PairedAlignments ()
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE	PairedAlignments (const Alignment &a, const Alignment &o)
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool	is_aligned () const
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool	is_paired () const
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool	is_concordant () const
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool	is_discordant () const
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE int32	score () const
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE int32	ed () const
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE Alignment &	mate (const uint32 m)
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE Alignment	mate (const uint32 m) const

Public Members
Alignment	m_a
Alignment	m_o

Constructor & Destructor Documentation

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE nvbio::io::PairedAlignments::PairedAlignments ( )

inline

Definition at line 202 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE nvbio::io::PairedAlignments::PairedAlignments ( const Alignment &  a, const Alignment &  o  )

inline

Definition at line 205 of file alignments.h.

Member Function Documentation

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE int32 nvbio::io::PairedAlignments::ed ( ) const

inline

Definition at line 212 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool nvbio::io::PairedAlignments::is_aligned ( ) const

inline

Definition at line 207 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool nvbio::io::PairedAlignments::is_concordant ( ) const

inline

Definition at line 209 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool nvbio::io::PairedAlignments::is_discordant ( ) const

inline

Definition at line 210 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE bool nvbio::io::PairedAlignments::is_paired ( ) const

inline

Definition at line 208 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE Alignment& nvbio::io::PairedAlignments::mate ( const uint32  m)

inline

Definition at line 215 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE Alignment nvbio::io::PairedAlignments::mate ( const uint32  m) const

inline

Definition at line 218 of file alignments.h.

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE int32 nvbio::io::PairedAlignments::score ( ) const

inline

Definition at line 211 of file alignments.h.

Member Data Documentation

Alignment nvbio::io::PairedAlignments::m_a

Definition at line 220 of file alignments.h.

Alignment nvbio::io::PairedAlignments::m_o

Definition at line 221 of file alignments.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/io/alignments.h