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nvbio::io::ReadDataFile_TXT_gz Struct Reference

Detailed description

Definition at line 107 of file reads_txt.h.

#include <reads_txt.h>

Inheritance diagram for nvbio::io::ReadDataFile_TXT_gz:
nvbio::io::ReadDataFile_TXT nvbio::io::ReadDataFile nvbio::io::ReadDataStream

Public Methods

 ReadDataFile_TXT_gz (const char *read_file_name, const QualityEncoding qualities, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags, const uint32 buffer_size=64536u)
 
virtual FileState fillBuffer (void)
 

Additional Inherited Members

- Public Types inherited from nvbio::io::ReadDataFile
enum  FileState {
  FILE_NOT_READY, FILE_OPEN_FAILED, FILE_OK, FILE_EOF,
  FILE_STREAM_ERROR, FILE_PARSE_ERROR
}
 
- Public Members inherited from nvbio::io::ReadDataStream
uint32 m_truncate_read_len
 
- Static Public Members inherited from nvbio::io::ReadDataFile
static const uint32 LONG_READ = 32*1024
 
- Proteced Methods inherited from nvbio::io::ReadDataFile_TXT
 ReadDataFile_TXT (const char *read_file_name, const QualityEncoding quality_encoding, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags, const uint32 buffer_size=64536u)
 
virtual int nextChunk (ReadDataRAM *output, uint32 max_reads, uint32 max_bps)
 
- Protected Members inherited from nvbio::io::ReadDataFile_TXT
const char * m_file_name
 
QualityEncoding m_quality_encoding
 
std::vector< char > m_buffer
 
uint32 m_buffer_size
 
uint32 m_buffer_pos
 
uint32 m_line
 
uint8 m_error_char
 
std::vector< char > m_name
 
std::vector< uint8m_read_bp
 
std::vector< uint8m_read_q
 

The documentation for this struct was generated from the following files: