NVBIO: nvbio::io::sequence_string< ALPHABET, FLAGS > Struct Template Reference

Detailed description

template< Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>
struct nvbio::io::sequence_string< ALPHABET, FLAGS >

Definition at line 124 of file sequence_encoder.cpp.

Public Methods
	sequence_string (const uint32 len, const uint8 sequence, const uint8 qual)

uint32	length () const

uint8	operator[] (const uint32 i) const

uint8	quality (const uint32 i) const

Public Members
const uint32	m_len

const uint8 *	m_sequence

const uint8 *	m_qual

Constructor & Destructor Documentation

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

nvbio::io::sequence_string< ALPHABET, FLAGS >::sequence_string	(	const uint32	len,
		const uint8 *	sequence,
		const uint8 *	qual
	)

inline

Definition at line 127 of file sequence_encoder.cpp.

Member Function Documentation

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

uint32 nvbio::io::sequence_string< ALPHABET, FLAGS >::length ( ) const

inline

Definition at line 130 of file sequence_encoder.cpp.

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

uint8 nvbio::io::sequence_string< ALPHABET, FLAGS >::operator[] ( const uint32 i) const

inline

Definition at line 133 of file sequence_encoder.cpp.

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

uint8 nvbio::io::sequence_string< ALPHABET, FLAGS >::quality ( const uint32 i) const

inline

Definition at line 163 of file sequence_encoder.cpp.

Member Data Documentation

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

const uint32 nvbio::io::sequence_string< ALPHABET, FLAGS >::m_len

Definition at line 170 of file sequence_encoder.cpp.

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

const uint8* nvbio::io::sequence_string< ALPHABET, FLAGS >::m_qual

Definition at line 172 of file sequence_encoder.cpp.

template<Alphabet ALPHABET, SequenceDataEncoder::StrandOp FLAGS>

const uint8* nvbio::io::sequence_string< ALPHABET, FLAGS >::m_sequence

Definition at line 171 of file sequence_encoder.cpp.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/io/sequence/sequence_encoder.cpp