nvbio::string_qgram_functor< string_type > Struct Template Reference

Detailed description

template< typename string_type>
struct nvbio::string_qgram_functor< string_type >

A utility functor to extract the i-th q-gram out of a string

Template Parameters

string_type

the string iterator type

Definition at line 802 of file qgram.h.

#include <qgram.h>

Public Types
typedef uint32	argument_type
typedef uint64	result_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	string_qgram_functor (const uint32 _Q, const uint32 _symbol_size, const uint32 _string_len, const string_type _string)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint64	operator() (const uint32 i) const

Public Members
const uint32	Q
	q-gram size More...
const uint32	symbol_size
	symbol size More...
const uint32	symbol_mask
	symbol size More...
const uint32	string_len
	string length More...
const string_type	string
	string iterator More...

Member Typedef Documentation

template<typename string_type>

typedef uint32 nvbio::string_qgram_functor< string_type >::argument_type

Definition at line 804 of file qgram.h.

template<typename string_type>

typedef uint64 nvbio::string_qgram_functor< string_type >::result_type

Definition at line 805 of file qgram.h.

Constructor & Destructor Documentation

template<typename string_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::string_qgram_functor< string_type >::string_qgram_functor ( const uint32  _Q, const uint32  _symbol_size, const uint32  _string_len, const string_type  _string  )

inline

constructor

Parameters

_Q	the q-gram length
_symbol_size	the size of the symbols, in bits
_string_len	string length
_string	string iterator

Definition at line 815 of file qgram.h.

Member Function Documentation

template<typename string_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint64 nvbio::string_qgram_functor< string_type >::operator() ( const uint32  i) const

inline

functor operator

Parameters

i	position along the string

Definition at line 827 of file qgram.h.

Member Data Documentation

template<typename string_type>

const uint32 nvbio::string_qgram_functor< string_type >::Q

q-gram size

Definition at line 836 of file qgram.h.

template<typename string_type>

const string_type nvbio::string_qgram_functor< string_type >::string

string iterator

Definition at line 840 of file qgram.h.

template<typename string_type>

const uint32 nvbio::string_qgram_functor< string_type >::string_len

string length

Definition at line 839 of file qgram.h.

template<typename string_type>

const uint32 nvbio::string_qgram_functor< string_type >::symbol_mask

symbol size

Definition at line 838 of file qgram.h.

template<typename string_type>

const uint32 nvbio::string_qgram_functor< string_type >::symbol_size

symbol size

Definition at line 837 of file qgram.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/qgram/qgram.h