NVBIO: nvbio::string_qgram_search_functor< qgram_index_type, string_type > Struct Template Reference

Detailed description

template< typename qgram_index_type, typename string_type>
struct nvbio::string_qgram_search_functor< qgram_index_type, string_type >

define a simple q-gram search functor

Definition at line 897 of file qgram.h.

#include <qgram.h>

Public Types
typedef uint32	argument_type

typedef uint2	result_type

Public Methods
	string_qgram_search_functor (const qgram_index_type _qgram_index, const uint32 _string_len, const string_type _string)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint2	operator() (const uint32 i) const

Public Members
const qgram_index_type	qgram_index

const uint32	string_len

const string_type	string

Member Typedef Documentation

template<typename qgram_index_type , typename string_type >

typedef uint32 nvbio::string_qgram_search_functor< qgram_index_type, string_type >::argument_type

Definition at line 899 of file qgram.h.

template<typename qgram_index_type , typename string_type >

typedef uint2 nvbio::string_qgram_search_functor< qgram_index_type, string_type >::result_type

Definition at line 900 of file qgram.h.

Constructor & Destructor Documentation

template<typename qgram_index_type , typename string_type >

nvbio::string_qgram_search_functor< qgram_index_type, string_type >::string_qgram_search_functor	(	const qgram_index_type	_qgram_index,
		const uint32	_string_len,
		const string_type	_string
	)

inline

constructor

Definition at line 904 of file qgram.h.

Member Function Documentation

template<typename qgram_index_type , typename string_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint2 nvbio::string_qgram_search_functor< qgram_index_type, string_type >::operator() ( const uint32 i) const

inline

functor operator

Definition at line 915 of file qgram.h.

Member Data Documentation

template<typename qgram_index_type , typename string_type >

const qgram_index_type nvbio::string_qgram_search_functor< qgram_index_type, string_type >::qgram_index

Definition at line 922 of file qgram.h.

template<typename qgram_index_type , typename string_type >

const string_type nvbio::string_qgram_search_functor< qgram_index_type, string_type >::string

Definition at line 924 of file qgram.h.

template<typename qgram_index_type , typename string_type >

const uint32 nvbio::string_qgram_search_functor< qgram_index_type, string_type >::string_len

Definition at line 923 of file qgram.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/qgram/qgram.h