nvbio::string_set_qgram_functor< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct nvbio::string_set_qgram_functor< string_set_type >

A utility functor to extract the i-th q-gram out of a string-set

Template Parameters

string_set_type

the string-set type

Definition at line 848 of file qgram.h.

#include <qgram.h>

Public Types
typedef uint32	argument_type
typedef uint64	result_type
typedef string_set_type::string_type	string_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	string_set_qgram_functor (const uint32 _Q, const uint32 _symbol_size, const string_set_type _string_set)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint64	operator() (const uint2 id) const

Public Members
const uint32	Q
	q-gram size More...
const uint32	symbol_size
	symbol size More...
const uint32	symbol_mask
	symbol size More...
const string_set_type	string_set
	string-set More...

Member Typedef Documentation

template<typename string_set_type>

typedef uint32 nvbio::string_set_qgram_functor< string_set_type >::argument_type

Definition at line 850 of file qgram.h.

template<typename string_set_type>

typedef uint64 nvbio::string_set_qgram_functor< string_set_type >::result_type

Definition at line 851 of file qgram.h.

template<typename string_set_type>

typedef string_set_type::string_type nvbio::string_set_qgram_functor< string_set_type >::string_type

Definition at line 853 of file qgram.h.

Constructor & Destructor Documentation

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::string_set_qgram_functor< string_set_type >::string_set_qgram_functor ( const uint32  _Q, const uint32  _symbol_size, const string_set_type  _string_set  )

inline

constructor

Parameters

_Q	the q-gram length
_symbol_size	the size of the symbols, in bits
_string_set	the string-set

Definition at line 862 of file qgram.h.

Member Function Documentation

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint64 nvbio::string_set_qgram_functor< string_set_type >::operator() ( const uint2  id) const

inline

functor operator

Parameters

id	string-set coordinate

Definition at line 873 of file qgram.h.

Member Data Documentation

template<typename string_set_type>

const uint32 nvbio::string_set_qgram_functor< string_set_type >::Q

q-gram size

Definition at line 888 of file qgram.h.

template<typename string_set_type>

const string_set_type nvbio::string_set_qgram_functor< string_set_type >::string_set

string-set

Definition at line 891 of file qgram.h.

template<typename string_set_type>

const uint32 nvbio::string_set_qgram_functor< string_set_type >::symbol_mask

symbol size

Definition at line 890 of file qgram.h.

template<typename string_set_type>

const uint32 nvbio::string_set_qgram_functor< string_set_type >::symbol_size

symbol size

Definition at line 889 of file qgram.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/qgram/qgram.h