super_coord_to_seq< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct super_coord_to_seq< string_set_type >

Definition at line 1029 of file kmers_inl.h.

#include <kmers_inl.h>

Public Types
typedef string_set_type::string_type	sequence

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	super_coord_to_seq (const string_set_type _string_set, const SequenceSetKmerCoord *_super_coords, const uint32 *_offsets, uint8 *_sequences)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	operator() (const uint64 idx) const

Public Members
const string_set_type	string_set
const SequenceSetKmerCoord *	super_coords
const uint32 *	offsets
uint8 *	sequences

Member Typedef Documentation

template<typename string_set_type >

typedef string_set_type::string_type super_coord_to_seq< string_set_type >::sequence

Definition at line 1031 of file kmers_inl.h.

Constructor & Destructor Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE super_coord_to_seq< string_set_type >::super_coord_to_seq ( const string_set_type  _string_set, const SequenceSetKmerCoord *  _super_coords, const uint32 *  _offsets, uint8 *  _sequences  )

inline

Definition at line 1038 of file kmers_inl.h.

Member Function Documentation

template<typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void super_coord_to_seq< string_set_type >::operator() ( const uint64  idx) const

inline

Definition at line 1045 of file kmers_inl.h.

Member Data Documentation

template<typename string_set_type >

const uint32* super_coord_to_seq< string_set_type >::offsets

Definition at line 1034 of file kmers_inl.h.

template<typename string_set_type >

uint8* super_coord_to_seq< string_set_type >::sequences

Definition at line 1035 of file kmers_inl.h.

template<typename string_set_type >

const string_set_type super_coord_to_seq< string_set_type >::string_set

Definition at line 1032 of file kmers_inl.h.

template<typename string_set_type >

const SequenceSetKmerCoord* super_coord_to_seq< string_set_type >::super_coords

Definition at line 1033 of file kmers_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/kmers_inl.h