assembly_graph_inl.h File Reference

#include <stdio.h>
#include <fstream>
#include "kmers.h"

Go to the source code of this file.

Classes
struct	graph_functor
struct	topological_sort_functor
struct	find_k_best_paths_functor
struct	edge_weights_functor
struct	flip_edges
struct	coord_to_seq< string_set_type >
struct	extract_active_region_source_sink< string_set_type >

Macros
#define	TOPO_SORT_LOCAL_NODE_SET_SIZE   200
#define	MAX_IN_DEGREE   20

Macro Definition Documentation

#define MAX_IN_DEGREE   20

Definition at line 33 of file assembly_graph_inl.h.

#define TOPO_SORT_LOCAL_NODE_SET_SIZE   200

Definition at line 32 of file assembly_graph_inl.h.