Detailed Description

: This module contains plain-view classes for SequenceData objects that can be adapted to use iterators of a user-specified type, so as to allow reinterpreting the base arrays, e.g. using LDG loads.

Classes
struct	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >

Typedefs
typedef SequenceDataViewCore < uint32 , uint32 , char , char >	nvbio::io::SequenceDataView
	A non-const SequenceData view More...

typedef SequenceDataViewCore < const uint32 , const uint32 , const char , const char >	nvbio::io::ConstSequenceDataView
	A const SequenceData view More...

typedef SequenceDataViewCore < cuda::ldg_pointer< uint32 > , cuda::ldg_pointer< uint32 > , const char , const char >	nvbio::io::LdgSequenceDataView
	An LDG-based SequenceData view More...

Typedef Documentation

typedef SequenceDataViewCore<const uint32*,const uint32*,const char*,const char*> nvbio::io::ConstSequenceDataView

A const SequenceData view

Definition at line 402 of file sequence.h.

typedef SequenceDataViewCore<cuda::ldg_pointer<uint32>,cuda::ldg_pointer<uint32>,const char*,const char*> nvbio::io::LdgSequenceDataView

An LDG-based SequenceData view

Definition at line 403 of file sequence.h.

typedef SequenceDataViewCore<uint32*,uint32*,char*,char*> nvbio::io::SequenceDataView

A non-const SequenceData view

Definition at line 401 of file sequence.h.