fmindex.h File Reference

#include <stdio.h>
#include <stdlib.h>
#include <vector>
#include <algorithm>
#include <nvbio/basic/mmap.h>
#include <nvbio/basic/vector.h>
#include <nvbio/basic/deinterleaved_iterator.h>
#include <nvbio/basic/cuda/ldg.h>
#include <nvbio/fmindex/fmindex.h>
#include <nvbio/fmindex/ssa.h>

Go to the source code of this file.

Classes
struct	nvbio::io::FMIndexDataCore
struct	nvbio::io::FMIndexData
struct	nvbio::io::FMIndexDataHost
struct	nvbio::io::FMIndexDataMMAPInfo
struct	nvbio::io::FMIndexDataMMAPServer
struct	nvbio::io::FMIndexDataMMAP
struct	nvbio::io::FMIndexDataDevice

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Functions
void	nvbio::io::init_ssa (const FMIndexData &driver_data, FMIndexData::ssa_storage_type &ssa, FMIndexData::ssa_storage_type &rssa)
void	nvbio::io::init_ssa (const FMIndexDataDevice &driver_data, FMIndexDataDevice::ssa_storage_type &ssa, FMIndexDataDevice::ssa_storage_type &rssa)