utils.h File Reference

#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/packedstream.h>
#include <nvbio/basic/packedstream_loader.h>
#include <nvbio/basic/vector_view.h>
#include <nvbio/io/sequence/sequence.h>
#include <nvbio/strings/string_iterator.h>

Go to the source code of this file.

Classes
struct	nvbio::ReverseXform< IndexType >
struct	nvbio::OffsetXform< IndexType >
struct	nvbio::quality_nop
struct	nvbio::ReadStreamQualities< ReadStreamType >
struct	nvbio::ReadStream< StreamType, QualType >
struct	nvbio::ReadLoader< SequenceDataT, Tag >
struct	nvbio::SequenceStreamLoader< SequenceDataT, Tag >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Enumerations
enum	nvbio::ReadType { nvbio::STANDARD = 0u, nvbio::COMPLEMENT = 1u }
enum	nvbio::DirType { nvbio::FORWARD = 0u, nvbio::REVERSE = 1u }

Functions
template<typename StreamType , typename QualType >
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE uint32	nvbio::length (const ReadStream< StreamType, QualType > &read)