NVBIO: nvbio::SequenceStreamLoader< SequenceDataT, Tag > Struct Template Reference

Detailed description

template< typename SequenceDataT, typename Tag>
struct nvbio::SequenceStreamLoader< SequenceDataT, Tag >

Utility class to load the full stream of a SequenceData. The Tag type allows to specify the caching policy.

Definition at line 324 of file utils.h.

#include <utils.h>

Public Types
typedef SequenceDataT::sequence_storage_iterator	stream_storage

typedef PackedStringLoader < stream_storage, SequenceDataT::SEQUENCE_BITS, SequenceDataT::SEQUENCE_BIG_ENDIAN, Tag >	loader_type

typedef loader_type::iterator	stream_iterator

typedef vector_view < stream_iterator >	string_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE string_type	load (const SequenceDataT &batch, const uint2 range)

Public Members
loader_type	loader

Member Typedef Documentation

template<typename SequenceDataT , typename Tag >

typedef PackedStringLoader<stream_storage, SequenceDataT::SEQUENCE_BITS, SequenceDataT::SEQUENCE_BIG_ENDIAN,Tag> nvbio::SequenceStreamLoader< SequenceDataT, Tag >::loader_type

Definition at line 327 of file utils.h.

template<typename SequenceDataT , typename Tag >

typedef loader_type::iterator nvbio::SequenceStreamLoader< SequenceDataT, Tag >::stream_iterator

Definition at line 328 of file utils.h.

template<typename SequenceDataT , typename Tag >

typedef SequenceDataT::sequence_storage_iterator nvbio::SequenceStreamLoader< SequenceDataT, Tag >::stream_storage

Definition at line 326 of file utils.h.

template<typename SequenceDataT , typename Tag >

typedef vector_view<stream_iterator> nvbio::SequenceStreamLoader< SequenceDataT, Tag >::string_type

Definition at line 329 of file utils.h.

Member Function Documentation

template<typename SequenceDataT , typename Tag >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE string_type nvbio::SequenceStreamLoader< SequenceDataT, Tag >::load	(	const SequenceDataT &	batch,
		const uint2	range
	)

inline

load a subset of the stream

Definition at line 334 of file utils.h.

Member Data Documentation

template<typename SequenceDataT , typename Tag >

loader_type nvbio::SequenceStreamLoader< SequenceDataT, Tag >::loader

Definition at line 341 of file utils.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/io/utils.h