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output_thread.h
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27 
28 // output_thread.h
29 //
30 
31 #pragma once
32 
33 #include "utils.h"
36 #include <zlib/zlib.h>
37 
38 using namespace nvbio;
39 
42 
47 {
54  OutputStageData(io::SequenceDataOutputStream* file) : m_file( file ) {}
55 
57 };
58 
63 {
65 
68  OutputStage() : data(NULL) {}
69 
74  OutputStage(OutputStageData* _data) : data(_data) {}
75 
78  bool process(PipelineContext& context);
79 
81 };
82