output_thread.h

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/*
 * nvbio
 * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
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// output_thread.h
//

#pragma once

#include "utils.h"
#include <nvbio/basic/pipeline_context.h>
#include <nvbio/io/sequence/sequence.h>
#include <zlib/zlib.h>

using namespace nvbio;


struct OutputStageData : public SequenceStats
{
    OutputStageData(io::SequenceDataOutputStream* file) : m_file( file ) {}

    io::SequenceDataOutputStream* m_file;
};

struct OutputStage
{
    typedef io::SequenceDataHost   argument_type;

    OutputStage() : data(NULL) {}

    OutputStage(OutputStageData* _data) : data(_data) {}

    bool process(PipelineContext& context);

    OutputStageData* data;
};